BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB034G12SP1|AL429959
(831 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig901 979 0.0
>3x_Contig901
Length = 2854
Score = 979 bits (486), Expect = 0.0
Identities = 547/578 (94%), Gaps = 1/578 (0%)
Strand = Plus / Minus
Query: 1 gatcgatattcagataaatttaatgcatatcctamctggactcaaaaacctttgatgtgc 60
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 689 gatcgatatccagataaatttaatgcatatcctacctggactcaaaaacctttgatgtgc 630
Query: 61 attgagaacaaatcaaamagcattcaaaattgtcatctttatctagaaagamacctacta 120
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 629 attgagaacaaatcaaacagcattcaaaattgtcatctttatctagaaagacacctacta 570
Query: 121 gatgattctattctcgaatccaamctgacaattggtgaaattccaaggtctgggtttaca 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 569 gatgattctattctcgaatccaacctgacaattggtgaaattccaaggtctgggtttaca 510
Query: 181 gctgtmtcagcggaggggaataatagtggattctgtaatatgcaamtgcggctaaacccc 240
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 509 gctgtctcagcggaggggaataatagtggattctgtaatatgcaactgcggctaaacccc 450
Query: 241 catgaaamacgtctaaacttttatcattcagamaaaaagtgcaatttgactttccattta 300
||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 449 catgaaacacgtctaatcttttatcattcagacaaaaagtgcaatttgactttccattta 390
Query: 301 mtatmtaawtctggtttggtttcaatgtcaaaatgtaaatmagawatattaactgctgag 360
||| ||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 389 ctatctaattctggtttggtttcaatgtcaaaatgtaaatcagatatattaactgctgag 330
Query: 361 tctagctggaatatcacaaawaatcagtggactattggtacttctgaatatttcaaaagt 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tctagctggaatatcacaaataatcagtggactattggtacttctgaatatttcaaaagt 270
Query: 421 cctgttttcaaactaaaaagtgatggtttcgatgatacttatctagattttgagctagtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 269 cctgttttcaaactaaaaagtgatggtttcgatgatacttatctagattttcagctagtc 210
Query: 481 tcgcagttaccagcgaaggtgaatwttcaaatatttgagtmcgatgattatagccctaca 540
|||||||||||||||||||||||| ||||||||||| | | | || ||||| ||||||||
Sbjct: 209 tcgcagttaccagcgaaggtgaattttcaaatattttattcctattattat-gccctaca 151
Query: 541 acgtccgawctttaagaatgamacaaactccccacaaa 578
|| ||| | |||||| || | ||||||||||||||||
Sbjct: 150 acttcctatctttaataaatacacaaactccccacaaa 113
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.32
Gapped
Lambda K H
1.40 0.714 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5107
Number of Sequences: 1807
Number of extensions: 5107
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 831
length of database: 10,358,551
effective HSP length: 16
effective length of query: 815
effective length of database: 10,329,639
effective search space: 8418655785
effective search space used: 8418655785
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.7 bits)
S2: 50 (101.2 bits)